PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000748.1_g00012.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 422aa    MW: 45179.6 Da    PI: 10.2709
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000748.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.7e-05190212223
                              EETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                              +Cp+Cg++Fs ++  ++H  + H
  Itr_sc000748.1_g00012.1 190 SCPKCGEHFSKWDAVESHHLSkH 212
                              7*****************99877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280191212IPR007087Zinc finger, C2H2
SuperFamilySSF563997.58E-21214421No hitNo description
Gene3DG3DSA:3.90.228.103.1E-11221398IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MPAVWLSLKK SLQCRSEPAE VHDPSKKVSS GTRKKTATVR SGCSRSIANL RDVVINGSRR  60
YNNGETPYLQ SPRSIGSNEL LNPITHEVVL NNSTCELKIT SYSFQDGGGG GAAGGGGGGG  120
WPFVQCTLKP GTPGPGGQYR KPGGGGVGSP TVKGSTGGLS RRVGAGFSGI VPRPKASNGG  180
PEFYGFKELS CPKCGEHFSK WDAVESHHLS KHAVTQLVEG DSSRSIVEMI CRTSWASSKP  240
DKNNNTGNNN GMERILKVHN MQKTLARFEE YRETVKIKAS KLAKKHARCL ADGNELLRFH  300
GTTVECSLGK NGSSSLCNSE KCQVCQILRH GFRVKKGGVG VFTASTSRRA VEAIEVKGGM  360
KRALIVCRVI AGRVHKPVEN NLQELSGFDS LAGKFGLHSS VEELFLLNPK ALLPCFVVIC  420
RA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016497682.10.0PREDICTED: uncharacterized protein LOC107816472
TrEMBLM1BYS00.0M1BYS0_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000559290.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22442235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27240.11e-130C2H2 family protein